Adl SM, Simpson AGB, Lane CE, Lukeš J, Bass D, Bowser SS, Brown MW, Burki F, Dunthorn M, Hampl V, Heiss H, Hoppenrath M, Lara E, le Gall L, Lynn DH, McManus H, Mitchell EAD,  Mozley‐Stanridge SE, Parfrey LW, Pawlowski J, Rueckert S, Shadwick L, Schoch CL, Smirnov A, Spiegel FW (2012) The revised classification of Eukaryotes. Journal of Eukaryotic Microbiology 59(5): 429-514.

Pawlowski J, Audic S, Adl S, Bass D, Belbahri L, Berney C, Bowser SS, Cepicka I, Decelle J, Dunthorn M, Fiore-Donno AM, Gile GH, Holzmann M, Jahn R, Jirku M, Keeling PJ, Kostka M, Kudryavtsev A, Lara E, Lukes J,. Mann DG, Mitchell EAD, Nitsche F, Romeralo M,  Saunders GW, Simpson AGB, Smirnov AV, Spouge JL, Stern RF, Stoeck T, Zimmermann J, Schindel D, de Vargas C (2012) CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms. PLoS Biol 10(11): e1001419.

A view of eukaryote phylogeny reflecting the classification presented by Adl et al, 2012:

Current state-of-the art phylogeny and barcode markers for the main protistan lineages:

Phylogenetic relationships among early Foraminifera inferred from partial small subunit rRNA gene sequences:

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Pawlowski J, Holzmann M, Berney C, Fahrni J, Gooday AJ, Cedhagen T, Habura A, Bowser SS (2003) The evolution of early Foraminifera. Proceedings of the National Academy of Sciences of the United States of America 100: 11494-11498